VCF File Conversion & Parsing
Budget: $250 – $750 USD
I'm in need of a freelancer who can help me parse my VCF file and convert it to a different format. The main goal of this task is to extract the genotype information from the file.
input will be VCF file (from ONT whole genome run) and csv file with columns containing rsID, chromosome number, position.
output will be same as input csv file, with extra column showing genotype from VCF at the given position
can run on Mac shell so either perl or python would be fine.
Ideal Skills & Experience:
- Proficient in parsing VCF files and understanding genotype data
- Experience in converting files to various formats like CSV, TXT, and XLS
- Attention to detail to ensure accurate extraction of the data
- Knowledge of any data validation methods would be a plus.
should be a simple task
input will be VCF file (from ONT whole genome run) and csv file with columns containing rsID, chromosome number, position.
output will be same as input csv file, with extra column showing genotype from VCF at the given position
can run on Mac shell so either perl or python would be fine.
Ideal Skills & Experience:
- Proficient in parsing VCF files and understanding genotype data
- Experience in converting files to various formats like CSV, TXT, and XLS
- Attention to detail to ensure accurate extraction of the data
- Knowledge of any data validation methods would be a plus.
should be a simple task