Bioinformatics Developer
Budget: €6 – €12 EUR
Hi Nikita Menon here,
Develop web based application:
1. Read and process data files FASTQ to CRAM to BAM to Variants. The goal is to produce EXCEL compatible output.
2. Detect and compare the genetics codes to reference genomes.
3. Produce a final output results.
I prefer to work in a phased manner, in your proposal submit how you prefer to divide the project in phases.
I am open to the idea of a script that can automate the conversion of FASTQ to CRAM files (BWA-MEM2, GEM, etc), to BAM files (SAMTools, etc) and to Variants (BCF Tools, etc). However, the entire process should be seamless and continuous.
I can provide more details upon request.
**** PLEASE DO NOT RESPOND IF YOU ARE A GENERAL PURPOSE IT DEVELOPER. I NEED SOMEONE WHO HAS EXPERIENCED IN WORKING WITH GENOMICS DATA. PLEASE READ NAME OF EACH TOOL THAT IS NEXT TO FILE FORMAT, GOOGLE IT AND UNDERSTAND WHAT IS ALL ABOUT. I AM NOT LOOKING FOR A FILE CONVERTOR, AS PEOPLE THINK AND RESPONDING BACK, IT IS NOT A MATTER OF CONVERTING FILE, BUT ACCOMPLISHING EACH TASK THAT IS ASSOCIATED WITH EACH FORMAT.***
Develop web based application:
1. Read and process data files FASTQ to CRAM to BAM to Variants. The goal is to produce EXCEL compatible output.
2. Detect and compare the genetics codes to reference genomes.
3. Produce a final output results.
I prefer to work in a phased manner, in your proposal submit how you prefer to divide the project in phases.
I am open to the idea of a script that can automate the conversion of FASTQ to CRAM files (BWA-MEM2, GEM, etc), to BAM files (SAMTools, etc) and to Variants (BCF Tools, etc). However, the entire process should be seamless and continuous.
I can provide more details upon request.
**** PLEASE DO NOT RESPOND IF YOU ARE A GENERAL PURPOSE IT DEVELOPER. I NEED SOMEONE WHO HAS EXPERIENCED IN WORKING WITH GENOMICS DATA. PLEASE READ NAME OF EACH TOOL THAT IS NEXT TO FILE FORMAT, GOOGLE IT AND UNDERSTAND WHAT IS ALL ABOUT. I AM NOT LOOKING FOR A FILE CONVERTOR, AS PEOPLE THINK AND RESPONDING BACK, IT IS NOT A MATTER OF CONVERTING FILE, BUT ACCOMPLISHING EACH TASK THAT IS ASSOCIATED WITH EACH FORMAT.***