Trajectory Analysis of Molecular Dynamics Simulations

I have already completed molecular dynamics (MD) simulations using the OpenMM engine. The simulations are finished, and I have the trajectory files and associated data.

I am looking for an experienced freelancer to analyze the simulation results and provide detailed insights.

Tasks Required:
• Process and analyze MD trajectories.
• Perform structural and dynamical analyses such as (but not limited to):
• RMSD, RMSF, radius of gyration
• Hydrogen bond analysis
• Secondary structure analysis
• Principal component analysis (PCA)
• Interaction analysis (protein–ligand, binding pocket stability, etc., if applicable)
• Generate plots, figures, and summary tables.
• Provide a written report summarizing the findings.

Deliverables
• Processed analysis results (plots, graphs, data files).
• Clear and concise written report of the findings.
• Scripts or workflows used (Python, MDTraj, GROMACS tools, VMD, or other standard MD analysis packages).

Requirements
• Strong background in molecular dynamics analysis.
• Experience with OpenMM trajectories (formats: DCD, PDB, etc.).
• Familiarity with MD analysis tools such as MDTraj, MDAnalysis, PyEMMA, GROMACS utilities, or VMD.
• Ability to clearly communicate results and interpretations.