Bioinformatics - process multiple CSV files, containerise for running on DNAnexus or similar
Budget: $750 – $1,500 AUD
I am looking for a freelancer with experience in bioinformatics to help me process multiple CSV files and containerise the pipeline for running on DNAnexus or a similar platform. Convert genomic positions and reference/variant data to cDNA positions against defined gene transcripts. Match data in CSV files against population (eg. gnomAD) and variant databases (eg. ClinVar, in-house database files).
Skills and Experience:
- Experience in bioinformatics and working with DNAnexus or similar platforms
- Proficiency in Python programming language
- Familiarity with containerisation
- Ability to create basic comments in the code for documentation purposes
The ideal candidate should be able to handle the entire project without requiring assistance from me. The project requires processing multiple CSV files and containerising them for running on DNAnexus or similar platforms. The code and processes used should have basic comments for documentation purposes.
Skills and Experience:
- Experience in bioinformatics and working with DNAnexus or similar platforms
- Proficiency in Python programming language
- Familiarity with containerisation
- Ability to create basic comments in the code for documentation purposes
The ideal candidate should be able to handle the entire project without requiring assistance from me. The project requires processing multiple CSV files and containerising them for running on DNAnexus or similar platforms. The code and processes used should have basic comments for documentation purposes.